TF_ChIP-seq_ENCSR707QWA
TF_ChIP-seq ENCSR707QWA [biosample_summary="Homo sapiens K562" and target="NR2F6"]
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| Id: | TF_ChIP-seq/ENCSR707QWA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR707QWA [biosamplesummary="Homo sapiens K562" and target="NR2F6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN948PAR|/analyses/ENCAN948PAR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF698BVF|/files/ENCFF698BVF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16473530 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR2F6-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF835FPJ|/files/ENCFF835FPJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.44 and a self consistency ratio of 2.49. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR707QWA | float |
TF_ChIP-seq_ENCSR707QWA |
TF_ChIP-seq ENCSR707QWA [biosample_summary="Homo sapiens K562" and target="NR2F6"]
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[6.94, 630] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF835FPJ.bed.gz | 402.35 KB | d5b887a9de3af9ba031b16e4b368d71f |
| ENCFF835FPJ.bed.gz.dvc | 100.0 B | 484db3ade6cba0a13ccca388f5ba2280 |
| ENCFF835FPJ.tabix.bed.gz | 307.55 KB | f23ae98c31214c700a0f3fb12af0d4f7 |
| ENCFF835FPJ.tabix.bed.gz.dvc | 106.0 B | 8d0c539a0990ccc90ffaae9db9645781 |
| ENCFF835FPJ.tabix.bed.gz.tbi | 142.57 KB | 39f2e01d66c0bd5bf59aad0a5c5b2723 |
| ENCFF835FPJ.tabix.bed.gz.tbi.dvc | 110.0 B | 65434b9ad6861b0f0dda7fd932b54734 |
| genomic_resource.yaml | 2.38 KB | 2eefabecd507798f5da43233b7aad283 |
| genomic_resource_original.yaml | 2.28 KB | e7fe8488c0fea1b55e64fa588abbdd64 |
| statistics/ |