TF_ChIP-seq_ENCSR706YUH
TF_ChIP-seq ENCSR706YUH [biosample_summary="Homo sapiens GM12878" and target="SMARCA5"]
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| Id: | TF_ChIP-seq/ENCSR706YUH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR706YUH [biosamplesummary="Homo sapiens GM12878" and target="SMARCA5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN809GSB|/analyses/ENCAN809GSB/} has in progress subobject document {2d9cd3c5-17d1-4426-8b8c-dbe544c2616a|/documents/2d9cd3c5-17d1-4426-8b8c-dbe544c2616a/} audit_internal_action: Released analysis {ENCAN809GSB|/analyses/ENCAN809GSB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF998MCZ|/files/ENCFF998MCZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF998MCZ|/files/ENCFF998MCZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR706YUH | float |
TF_ChIP-seq_ENCSR706YUH |
TF_ChIP-seq ENCSR706YUH [biosample_summary="Homo sapiens GM12878" and target="SMARCA5"]
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[15.6, 891] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF550FDV.bed.gz | 499.64 KB | 0824bb9814884df9aa0528923cc7d8f6 |
| ENCFF550FDV.bed.gz.dvc | 100.0 B | 1b643f9b49e668b94dad0031675e641c |
| ENCFF550FDV.tabix.bed.gz | 349.83 KB | 1faa39912d697650cd1882927c0a00fe |
| ENCFF550FDV.tabix.bed.gz.dvc | 106.0 B | 256cbffb325016457c61d8893fc50f15 |
| ENCFF550FDV.tabix.bed.gz.tbi | 139.99 KB | 88e316af06a2c48139b5023325c19d05 |
| ENCFF550FDV.tabix.bed.gz.tbi.dvc | 110.0 B | 78c7dedbb041fca69836f82e45a8b672 |
| genomic_resource.yaml | 2.88 KB | 16a35e9a17400a5caa956ea61600180f |
| genomic_resource_original.yaml | 2.79 KB | ba8636af74b76374def8c825de1a2aea |
| statistics/ |