TF_ChIP-seq_ENCSR706VOO
TF_ChIP-seq ENCSR706VOO [biosample_summary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"]
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| Id: | TF_ChIP-seq/ENCSR706VOO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR706VOO [biosamplesummary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN358KOX|/analyses/ENCAN358KOX/} has in progress subobject document {d317121b-30b5-4626-8d83-7a3225556a0f|/documents/d317121b-30b5-4626-8d83-7a3225556a0f/} audit_internal_action: Released analysis {ENCAN358KOX|/analyses/ENCAN358KOX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF545TAJ|/files/ENCFF545TAJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF545TAJ|/files/ENCFF545TAJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF384OIN|/files/ENCFF384OIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF384OIN|/files/ENCFF384OIN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR706VOO | float |
TF_ChIP-seq_ENCSR706VOO |
TF_ChIP-seq ENCSR706VOO [biosample_summary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2" and target="GATA2"]
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[8.39, 482] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF567HPV.bed.gz | 568.21 KB | 0891f1aa0f85528e0a861e81589b1ec7 |
| ENCFF567HPV.bed.gz.dvc | 100.0 B | 25178910c575cdee5fba1b77ff467c02 |
| ENCFF567HPV.tabix.bed.gz | 426.78 KB | 525705bdec21b768934e309a71fdb8ea |
| ENCFF567HPV.tabix.bed.gz.dvc | 106.0 B | 5ce8c58f4d4546ac1d967fd82e720372 |
| ENCFF567HPV.tabix.bed.gz.tbi | 202.81 KB | 73233db357aeb18ffe8d2140e3d6ca3b |
| ENCFF567HPV.tabix.bed.gz.tbi.dvc | 110.0 B | 7969e0ca6bd9becb7f0247a705b51e6c |
| genomic_resource.yaml | 4.45 KB | a8cde53c983599329d048416b5d99294 |
| genomic_resource_original.yaml | 4.28 KB | eea15d638e7aefd6660105ab859a74a9 |
| statistics/ |