TF_ChIP-seq_ENCSR704IGU
TF_ChIP-seq ENCSR704IGU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZGPAT" and target="ZGPAT"]
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| Id: | TF_ChIP-seq/ENCSR704IGU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR704IGU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZGPAT" and target="ZGPAT"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZGPAT output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN354UIQ|/analyses/ENCAN354UIQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF855QOS|/files/ENCFF855QOS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF855QOS|/files/ENCFF855QOS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF988EJM|/files/ENCFF988EJM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF988EJM|/files/ENCFF988EJM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR704IGU | float |
TF_ChIP-seq_ENCSR704IGU |
TF_ChIP-seq ENCSR704IGU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZGPAT" and target="ZGPAT"]
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[13.5, 531] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF061HCE.bed.gz | 750.79 KB | 717e6c7b23aad67149c38b3398ce7cce |
| ENCFF061HCE.bed.gz.dvc | 100.0 B | f87a57046273e7000ee2054bcb9b8595 |
| ENCFF061HCE.tabix.bed.gz | 623.52 KB | 866269124650d6860590add3a20cffb4 |
| ENCFF061HCE.tabix.bed.gz.dvc | 106.0 B | f81c6eeec80b833013c45f485a4d93ec |
| ENCFF061HCE.tabix.bed.gz.tbi | 186.98 KB | 6aa081bf4941fa5dd790783d455666ec |
| ENCFF061HCE.tabix.bed.gz.tbi.dvc | 110.0 B | e8012875588c4f234630e55d7871e610 |
| genomic_resource.yaml | 4.2 KB | 77b41c3d9890f3ab3b1bd0ef6ed6a2d0 |
| genomic_resource_original.yaml | 4.04 KB | 578743a8a5c31d857cda605beeac8e62 |
| statistics/ |