TF_ChIP-seq_ENCSR704ENT
TF_ChIP-seq ENCSR704ENT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF776" and target="ZNF776"]
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| Id: | TF_ChIP-seq/ENCSR704ENT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR704ENT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF776" and target="ZNF776"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF776 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN381ZRP|/analyses/ENCAN381ZRP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN381ZRP|/analyses/ENCAN381ZRP/} has in progress subobject document {4ade772e-9bc4-4851-9324-087d4f8aeb69|/documents/4ade772e-9bc4-4851-9324-087d4f8aeb69/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF261EHF|/files/ENCFF261EHF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF261EHF|/files/ENCFF261EHF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.99. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF067AQK|/files/ENCFF067AQK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF067AQK|/files/ENCFF067AQK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.42. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR704ENT | float |
TF_ChIP-seq_ENCSR704ENT |
TF_ChIP-seq ENCSR704ENT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF776" and target="ZNF776"]
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[12.6, 472] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF396ZSB.bed.gz | 238.86 KB | d009b30ee6e2c4579aeb93be8cce20f0 |
| ENCFF396ZSB.bed.gz.dvc | 100.0 B | 333c1d5f86bd56705267783f52df8aeb |
| ENCFF396ZSB.tabix.bed.gz | 191.31 KB | b09c537687bd1409650ea53e680bd4e3 |
| ENCFF396ZSB.tabix.bed.gz.dvc | 106.0 B | 379798f1c9a8141bea7810e087310d54 |
| ENCFF396ZSB.tabix.bed.gz.tbi | 80.74 KB | 9c7b4717da5fad6daa7db95708f8b270 |
| ENCFF396ZSB.tabix.bed.gz.tbi.dvc | 109.0 B | 44c82a51c150ba6f562d7056386cb7b2 |
| genomic_resource.yaml | 4.45 KB | d35572af354c3a53f037e36472cbd564 |
| genomic_resource_original.yaml | 4.29 KB | 806e29d106ca7758c59b2fc9301eb9ae |
| statistics/ |