TF_ChIP-seq_ENCSR703TNG
TF_ChIP-seq ENCSR703TNG [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR703TNG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR703TNG [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF081TVG|/files/ENCFF081TVG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN822HSC|/analyses/ENCAN822HSC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF955RIY|/files/ENCFF955RIY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19995061 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RAD21-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF081TVG|/files/ENCFF081TVG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 5.03 and a self consistency ratio of 1.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF813NOM|/files/ENCFF813NOM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 5.03 and a self consistency ratio of 1.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR703TNG | float |
TF_ChIP-seq_ENCSR703TNG |
TF_ChIP-seq ENCSR703TNG [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21" and target="RAD21"]
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[5.63, 582] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF081TVG.bed.gz | 909.63 KB | e1fc73741161fed5057c55788a8fe2fe |
| ENCFF081TVG.bed.gz.dvc | 100.0 B | 185bf5dff1b9de2cc0479cc19433a4fb |
| ENCFF081TVG.tabix.bed.gz | 675.96 KB | cc11f389a037f1f7cf2996fc66b251a4 |
| ENCFF081TVG.tabix.bed.gz.dvc | 106.0 B | 83930b46cac9232cab48af102cc5f44f |
| ENCFF081TVG.tabix.bed.gz.tbi | 330.14 KB | 5a23c72bd4506d18ac608a917f688aae |
| ENCFF081TVG.tabix.bed.gz.tbi.dvc | 110.0 B | 65241d5fe6596a65a7475cbcf31187ed |
| genomic_resource.yaml | 3.4 KB | c2010d68b94e3a7dab1d2546372774b8 |
| genomic_resource_original.yaml | 3.23 KB | d50a9a7f5d8b36f99ad1800388a8c66f |
| statistics/ |