TF_ChIP-seq_ENCSR703KWN
TF_ChIP-seq ENCSR703KWN [biosample_summary="Homo sapiens MM.1S" and target="EZH2"]
×
| Id: | TF_ChIP-seq/ENCSR703KWN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR703KWN [biosamplesummary="Homo sapiens MM.1S" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN632XJX|/analyses/ENCAN632XJX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF429JNW|/files/ENCFF429JNW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19523235 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF536GEN|/files/ENCFF536GEN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 10.00. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF429JNW|/files/ENCFF429JNW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF429JNW|/files/ENCFF429JNW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.03. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR703KWN | float |
TF_ChIP-seq_ENCSR703KWN |
TF_ChIP-seq ENCSR703KWN [biosample_summary="Homo sapiens MM.1S" and target="EZH2"]
|
|
[20.4, 304] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF905EBM.bed.gz | 26.39 KB | 6f8fb897b7d3c2a99b4b4753454bc67f |
| ENCFF905EBM.bed.gz.dvc | 99.0 B | 74d16a823f60fd71862dc7d9d8266e11 |
| ENCFF905EBM.tabix.bed.gz | 18.5 KB | df8ad0a5c82bcd8184e2823128e60cbf |
| ENCFF905EBM.tabix.bed.gz.dvc | 105.0 B | 8c956f0b345117e0cf27d6226602df4e |
| ENCFF905EBM.tabix.bed.gz.tbi | 12.14 KB | 8adea68f2523604dc09a4c4221d3e8b5 |
| ENCFF905EBM.tabix.bed.gz.tbi.dvc | 109.0 B | 73665b09b23eac90b585702e8ee63557 |
| genomic_resource.yaml | 3.81 KB | b6a062e7761c683ac5d7aa79231a2790 |
| genomic_resource_original.yaml | 3.72 KB | 48491de58969e865650efee167ed035f |
| statistics/ |