TF_ChIP-seq_ENCSR700PNE
TF_ChIP-seq ENCSR700PNE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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| Id: | TF_ChIP-seq/ENCSR700PNE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR700PNE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAZ output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN548DDF|/analyses/ENCAN548DDF/} has in progress subobject document {3546f4e3-2a11-48c4-9413-2b9c729b98e4|/documents/3546f4e3-2a11-48c4-9413-2b9c729b98e4/} audit_internal_action: Released analysis {ENCAN548DDF|/analyses/ENCAN548DDF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF772LQP|/files/ENCFF772LQP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 19826546 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAZ-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF772LQP|/files/ENCFF772LQP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF772LQP|/files/ENCFF772LQP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF528NNZ|/files/ENCFF528NNZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF528NNZ|/files/ENCFF528NNZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR700PNE | float |
TF_ChIP-seq_ENCSR700PNE |
TF_ChIP-seq ENCSR700PNE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ" and target="MAZ"]
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[8.65, 483] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF341OLL.bed.gz | 491.89 KB | 24366c8f6288cda42abfc1a636b97ffa |
| ENCFF341OLL.bed.gz.dvc | 100.0 B | 644055089151856bdc3de2953bdf6aa8 |
| ENCFF341OLL.tabix.bed.gz | 401.88 KB | 80ce881347f5a3566ff9b8a2b54760a2 |
| ENCFF341OLL.tabix.bed.gz.dvc | 106.0 B | 06f5bb2b3328788f4bfe20b2446a69e6 |
| ENCFF341OLL.tabix.bed.gz.tbi | 133.23 KB | f2b46edd7bedd2ef551612f12a1d9a16 |
| ENCFF341OLL.tabix.bed.gz.tbi.dvc | 110.0 B | 962037eeff12912379a9cc2f5c1a5e24 |
| genomic_resource.yaml | 4.91 KB | 3ab5780bafb1c51fdcb9fd20110506d1 |
| genomic_resource_original.yaml | 4.75 KB | 74670d25865531e180abd8c70e8c1459 |
| statistics/ |