TF_ChIP-seq_ENCSR700LFA
TF_ChIP-seq ENCSR700LFA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1" and target="CREB1"]
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| Id: | TF_ChIP-seq/ENCSR700LFA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR700LFA [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1" and target="CREB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN271ELB|/analyses/ENCAN271ELB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF409HDQ|/files/ENCFF409HDQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF409HDQ|/files/ENCFF409HDQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF557CNR|/files/ENCFF557CNR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF557CNR|/files/ENCFF557CNR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR700LFA | float |
TF_ChIP-seq_ENCSR700LFA |
TF_ChIP-seq ENCSR700LFA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1" and target="CREB1"]
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[8.39, 402] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF403FJH.bed.gz | 86.64 KB | 034f472a72c1f8545497cd6b0fec0749 |
| ENCFF403FJH.bed.gz.dvc | 99.0 B | 69c776bfea6c64e5bc21097879a7b6ab |
| ENCFF403FJH.tabix.bed.gz | 64.24 KB | 9b4bd42ee58eec53a6670232380cee2c |
| ENCFF403FJH.tabix.bed.gz.dvc | 105.0 B | bf06569cc9e6a7e139ecdca7ec5692a7 |
| ENCFF403FJH.tabix.bed.gz.tbi | 44.81 KB | a3bcc3bf2e4579535c3b7273e4b3ef39 |
| ENCFF403FJH.tabix.bed.gz.tbi.dvc | 109.0 B | f43eef9b04d32620ff2cacd55ad554b6 |
| genomic_resource.yaml | 4.23 KB | e7423932895c6dd33e113ecc4f9f50e9 |
| genomic_resource_original.yaml | 4.07 KB | f0a88d42c55b011ac2384774ef71cfe8 |
| statistics/ |