TF_ChIP-seq_ENCSR699ZES
TF_ChIP-seq ENCSR699ZES [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF670" and target="ZNF670"]
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| Id: | TF_ChIP-seq/ENCSR699ZES |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR699ZES [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF670" and target="ZNF670"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF670 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN739LRS|/analyses/ENCAN739LRS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF647WPV|/files/ENCFF647WPV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF647WPV|/files/ENCFF647WPV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.47. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF265QIF|/files/ENCFF265QIF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.63. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR699ZES | float |
TF_ChIP-seq_ENCSR699ZES |
TF_ChIP-seq ENCSR699ZES [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF670" and target="ZNF670"]
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[12, 380] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF265QIF.bed.gz | 294.41 KB | b7248645b14e5c57b9e51a64578a0a2d |
| ENCFF265QIF.bed.gz.dvc | 100.0 B | ad61aebaddb7d9b90d907dafa4fd0c4e |
| ENCFF265QIF.tabix.bed.gz | 229.78 KB | 91405a4296703ee22b7326269f3941dd |
| ENCFF265QIF.tabix.bed.gz.dvc | 106.0 B | efac5bd4e2fc7f3c1649be68cc156fce |
| ENCFF265QIF.tabix.bed.gz.tbi | 92.83 KB | e8d543c0cc1e0acb03cc6a45e69c8117 |
| ENCFF265QIF.tabix.bed.gz.tbi.dvc | 109.0 B | 7e039189446b4c0de19dd4335b2ef091 |
| genomic_resource.yaml | 3.49 KB | 695852d209f8dd34570e5ecd5b6b6da3 |
| genomic_resource_original.yaml | 3.33 KB | bea3a4d319b048993f71a139f9e2b5f0 |
| statistics/ |