TF_ChIP-seq_ENCSR699PVC
TF_ChIP-seq ENCSR699PVC [biosample_summary="Homo sapiens K562" and target="CBFA2T2"]
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| Id: | TF_ChIP-seq/ENCSR699PVC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR699PVC [biosamplesummary="Homo sapiens K562" and target="CBFA2T2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN866SBK|/analyses/ENCAN866SBK/} has in progress subobject document {0255620f-ccfa-4575-8e95-0295396d3e48|/documents/0255620f-ccfa-4575-8e95-0295396d3e48/} audit_internal_action: Released analysis {ENCAN866SBK|/analyses/ENCAN866SBK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF684SUT|/files/ENCFF684SUT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF684SUT|/files/ENCFF684SUT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR699PVC | float |
TF_ChIP-seq_ENCSR699PVC |
TF_ChIP-seq ENCSR699PVC [biosample_summary="Homo sapiens K562" and target="CBFA2T2"]
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[11.2, 1.5e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF543GET.bed.gz | 516.62 KB | 38ea0168156bc5df4d9643245260d881 |
| ENCFF543GET.bed.gz.dvc | 100.0 B | 7502d602f1bf515b76d80d3193ecf77d |
| ENCFF543GET.tabix.bed.gz | 361.23 KB | 2e9c5a55efbc6999da447b18affa1859 |
| ENCFF543GET.tabix.bed.gz.dvc | 106.0 B | 275d62703c7bdaf27fed24ac31e2b966 |
| ENCFF543GET.tabix.bed.gz.tbi | 183.97 KB | dfa0401f29542c60ba2b03de47c4e720 |
| ENCFF543GET.tabix.bed.gz.tbi.dvc | 110.0 B | 1fad7e54fdd44de0742a5d8c8ae0102a |
| genomic_resource.yaml | 2.89 KB | 36de1c5bf57329311ca203ff568b8f96 |
| genomic_resource_original.yaml | 2.79 KB | ba40334fe7e5cf09cec0fc56fc3bc124 |
| statistics/ |