TF_ChIP-seq_ENCSR697WMX
TF_ChIP-seq ENCSR697WMX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"]
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| Id: | TF_ChIP-seq/ENCSR697WMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR697WMX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN690DOJ|/analyses/ENCAN690DOJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN690DOJ|/analyses/ENCAN690DOJ/} has in progress subobject document {4478a623-4bd5-46e5-8d73-d744161b7e48|/documents/4478a623-4bd5-46e5-8d73-d744161b7e48/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF007WTJ|/files/ENCFF007WTJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF007WTJ|/files/ENCFF007WTJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF285TEX|/files/ENCFF285TEX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF285TEX|/files/ENCFF285TEX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR697WMX | float |
TF_ChIP-seq_ENCSR697WMX |
TF_ChIP-seq ENCSR697WMX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1" and target="HIVEP1"]
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[15.2, 654] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF076ESL.bed.gz | 313.02 KB | 719f4f3afa39ffc53d8cb662c9c793b4 |
| ENCFF076ESL.bed.gz.dvc | 100.0 B | 4d75182ae4089e64934453a0f64a1897 |
| ENCFF076ESL.tabix.bed.gz | 246.73 KB | 929a45472210fd6810638cdb96ebf396 |
| ENCFF076ESL.tabix.bed.gz.dvc | 106.0 B | ae2d951058019cb5028552b3f951f0d0 |
| ENCFF076ESL.tabix.bed.gz.tbi | 98.11 KB | 209d2a8b0104c333676b189e000d7e56 |
| ENCFF076ESL.tabix.bed.gz.tbi.dvc | 110.0 B | cef86d19bb8a1398a1b76ac7d4c34cbc |
| genomic_resource.yaml | 4.45 KB | 410ce6374283e4324fa274aefab6cdfc |
| genomic_resource_original.yaml | 4.29 KB | 4f68028bbeba7eacb69a53af88f478b3 |
| statistics/ |