TF_ChIP-seq_ENCSR697CUP
TF_ChIP-seq ENCSR697CUP [biosample_summary="Homo sapiens MCF-7" and target="HCFC1"]
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| Id: | TF_ChIP-seq/ENCSR697CUP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR697CUP [biosamplesummary="Homo sapiens MCF-7" and target="HCFC1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN610IMI|/analyses/ENCAN610IMI/} has in progress subobject document {059f66f6-922f-410c-beab-268b6b6ee5d3|/documents/059f66f6-922f-410c-beab-268b6b6ee5d3/} audit_internal_action: Released analysis {ENCAN610IMI|/analyses/ENCAN610IMI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF089XSR|/files/ENCFF089XSR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF089XSR|/files/ENCFF089XSR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR697CUP | float |
TF_ChIP-seq_ENCSR697CUP |
TF_ChIP-seq ENCSR697CUP [biosample_summary="Homo sapiens MCF-7" and target="HCFC1"]
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[12.3, 1.47e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF796EMB.bed.gz | 198.33 KB | d490d90d3fa51655bc6030e7a2d3323b |
| ENCFF796EMB.bed.gz.dvc | 100.0 B | 3e0d235e9ded806921b244fd18db4686 |
| ENCFF796EMB.tabix.bed.gz | 137.66 KB | bf7178c7bd2803a25dc47b20b2db0b3b |
| ENCFF796EMB.tabix.bed.gz.dvc | 106.0 B | 95737074c95297e12e3927cc34e056fa |
| ENCFF796EMB.tabix.bed.gz.tbi | 79.6 KB | 2b5028acc9c9a23999db0ddb72b88994 |
| ENCFF796EMB.tabix.bed.gz.tbi.dvc | 109.0 B | 4e4451baa309210ac5d3d944447b983c |
| genomic_resource.yaml | 2.87 KB | 0d187b140165f9c4adc6ec6c66aa6dea |
| genomic_resource_original.yaml | 2.78 KB | 1ec430077dae009bcf3b213d6056a360 |
| statistics/ |