TF_ChIP-seq_ENCSR697CNF
TF_ChIP-seq ENCSR697CNF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF571" and target="ZNF571"]
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| Id: | TF_ChIP-seq/ENCSR697CNF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR697CNF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF571" and target="ZNF571"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF571 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN111UVP|/analyses/ENCAN111UVP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF144UAV|/files/ENCFF144UAV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 9740019 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF571-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF948LTB|/files/ENCFF948LTB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 8790867 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF571-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF144UAV|/files/ENCFF144UAV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF144UAV|/files/ENCFF144UAV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR697CNF | float |
TF_ChIP-seq_ENCSR697CNF |
TF_ChIP-seq ENCSR697CNF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF571" and target="ZNF571"]
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[3.99, 325] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF249WHV.bed.gz | 98.71 KB | 47896b1a002e9459e166efc467856687 |
| ENCFF249WHV.bed.gz.dvc | 100.0 B | a49711f7db42300826cebcd1e56e5c63 |
| ENCFF249WHV.tabix.bed.gz | 81.66 KB | 44eaaa14b78a5475acf512f720e8e275 |
| ENCFF249WHV.tabix.bed.gz.dvc | 105.0 B | d802f0786c58a59c7bd0bb843704982b |
| ENCFF249WHV.tabix.bed.gz.tbi | 44.72 KB | 0eb6355b8d4efe4fe07051f1736bcd0b |
| ENCFF249WHV.tabix.bed.gz.tbi.dvc | 109.0 B | d752372829a7ff42454a6f01b87825e5 |
| genomic_resource.yaml | 3.95 KB | af2aa20badeea21b7c2b7c7a8caec9f5 |
| genomic_resource_original.yaml | 3.79 KB | 4a6877803e03c9205de1ed0e3247038a |
| statistics/ |