TF_ChIP-seq_ENCSR695SLS
TF_ChIP-seq ENCSR695SLS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510" and target="ZNF510"]
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| Id: | TF_ChIP-seq/ENCSR695SLS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR695SLS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510" and target="ZNF510"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN911QYS|/analyses/ENCAN911QYS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN911QYS|/analyses/ENCAN911QYS/} has in progress subobject document {b48f868f-1b14-44da-b01f-df81a354be8c|/documents/b48f868f-1b14-44da-b01f-df81a354be8c/} audit_warning: Processed alignments file {ENCFF440YRP|/files/ENCFF440YRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17177922 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF510-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF440YRP|/files/ENCFF440YRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF440YRP|/files/ENCFF440YRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF445DHE|/files/ENCFF445DHE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF445DHE|/files/ENCFF445DHE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR695SLS | float |
TF_ChIP-seq_ENCSR695SLS |
TF_ChIP-seq ENCSR695SLS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510" and target="ZNF510"]
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[10.3, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF108PPK.bed.gz | 199.44 KB | 3bb8547f46460579b58c6d6cf886bdfe |
| ENCFF108PPK.bed.gz.dvc | 100.0 B | 8ecac325da32d5f14b033cd166d411f6 |
| ENCFF108PPK.tabix.bed.gz | 158.62 KB | 90412175f3e2aa3015cdcff64f5da0ba |
| ENCFF108PPK.tabix.bed.gz.dvc | 106.0 B | c2131ba2e77620063c68de4f518e3be6 |
| ENCFF108PPK.tabix.bed.gz.tbi | 69.34 KB | 05fc7b98ea0afcab8bc086cb232d7b54 |
| ENCFF108PPK.tabix.bed.gz.tbi.dvc | 109.0 B | 1410d69f6ed8f9d868cbc999107702be |
| genomic_resource.yaml | 4.94 KB | 2cc3919bbfc8b60585b4ce1704d0f0f4 |
| genomic_resource_original.yaml | 4.77 KB | f8df2e77bb22f0db17ed4e88a08604fa |
| statistics/ |