TF_ChIP-seq_ENCSR693TYT
TF_ChIP-seq ENCSR693TYT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75D" and target="ZNF75D"]
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| Id: | TF_ChIP-seq/ENCSR693TYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR693TYT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75D" and target="ZNF75D"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75D output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN564HRX|/analyses/ENCAN564HRX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF867WHG|/files/ENCFF867WHG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF867WHG|/files/ENCFF867WHG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.89. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF654UUO|/files/ENCFF654UUO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF654UUO|/files/ENCFF654UUO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF501HSY|/files/ENCFF501HSY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.93 and a self consistency ratio of 5.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR693TYT | float |
TF_ChIP-seq_ENCSR693TYT |
TF_ChIP-seq ENCSR693TYT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75D" and target="ZNF75D"]
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[11.5, 486] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF501HSY.bed.gz | 47.33 KB | 3c8c7af6cf3b19cd4e75200dcc16d3ab |
| ENCFF501HSY.bed.gz.dvc | 99.0 B | e4a5938550183c2263fd6cf1bd6390b1 |
| ENCFF501HSY.tabix.bed.gz | 33.05 KB | 27052bcea0ddde53b4e9e5d9b6c1000d |
| ENCFF501HSY.tabix.bed.gz.dvc | 105.0 B | a9592b0503fe10f414643bbbf0cd5822 |
| ENCFF501HSY.tabix.bed.gz.tbi | 24.53 KB | d1a1513a5688ee32d861457f90eaee77 |
| ENCFF501HSY.tabix.bed.gz.tbi.dvc | 109.0 B | d87cf21fc5d16a85df2ee55ad17c27d2 |
| genomic_resource.yaml | 4.76 KB | b3d9acf7f036b7c46118ec7ae1766f4a |
| genomic_resource_original.yaml | 4.59 KB | dc84e0999e19baea4d470c57163c45fa |
| statistics/ |