TF_ChIP-seq_ENCSR692RET
TF_ChIP-seq ENCSR692RET [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR4A1" and target="NR4A1"]
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| Id: | TF_ChIP-seq/ENCSR692RET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR692RET [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR4A1" and target="NR4A1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR4A1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN315MNG|/analyses/ENCAN315MNG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN315MNG|/analyses/ENCAN315MNG/} has in progress subobject document {ea70572b-7da5-49b6-8769-022c4b9782d2|/documents/ea70572b-7da5-49b6-8769-022c4b9782d2/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF069ERV|/files/ENCFF069ERV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF069ERV|/files/ENCFF069ERV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF815JNE|/files/ENCFF815JNE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF815JNE|/files/ENCFF815JNE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR692RET | float |
TF_ChIP-seq_ENCSR692RET |
TF_ChIP-seq ENCSR692RET [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR4A1" and target="NR4A1"]
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[15, 1.1e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF137TCL.bed.gz | 90.7 KB | c5822408d9fc55e16375b1424dd1e7d5 |
| ENCFF137TCL.bed.gz.dvc | 99.0 B | ee997a296880b01c3efb118ac6663d1e |
| ENCFF137TCL.tabix.bed.gz | 58.5 KB | a63ddee6bf1b2246d790681f02abd4d9 |
| ENCFF137TCL.tabix.bed.gz.dvc | 105.0 B | f112d255c8231c78fa588c1841e1171a |
| ENCFF137TCL.tabix.bed.gz.tbi | 39.87 KB | 8655b0c5bcd7baecd7da90f8b5814675 |
| ENCFF137TCL.tabix.bed.gz.tbi.dvc | 109.0 B | 2fd24a16f356f622e01ec3e8e495e5db |
| genomic_resource.yaml | 4.44 KB | 26a53ee7ad284d5a16d83ca8cb394eff |
| genomic_resource_original.yaml | 4.28 KB | cb236a8db0a02b7186aedca0e14c46b6 |
| statistics/ |