TF_ChIP-seq_ENCSR691CPM
TF_ChIP-seq ENCSR691CPM [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR691CPM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR691CPM [biosamplesummary="Homo sapiens spleen tissue female adult (51 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: File {ENCFF323FPP|/files/ENCFF323FPP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN909SAQ|/analyses/ENCAN909SAQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF722XIO|/files/ENCFF722XIO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF722XIO|/files/ENCFF722XIO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR691CPM | float |
TF_ChIP-seq_ENCSR691CPM |
TF_ChIP-seq ENCSR691CPM [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="POLR2A"]
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[11.2, 1.15e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF323FPP.bed.gz | 229.5 KB | 710c4d5af6bd2f4fc53c5012fc925d62 |
| ENCFF323FPP.bed.gz.dvc | 100.0 B | 7e4ab510cbec20c17946ff5c1047d322 |
| ENCFF323FPP.tabix.bed.gz | 157.84 KB | 9b7181cb1dc6f705c03ba17095e150d8 |
| ENCFF323FPP.tabix.bed.gz.dvc | 106.0 B | f3de6a61ef3595f361f68687e24fb735 |
| ENCFF323FPP.tabix.bed.gz.tbi | 90.5 KB | fa5b563669d546432e0880484d20f9fb |
| ENCFF323FPP.tabix.bed.gz.tbi.dvc | 109.0 B | 3318f12827d80099c81a4cc13cce6390 |
| genomic_resource.yaml | 2.92 KB | aa251a57cc85290f75fff2cd278a7aee |
| genomic_resource_original.yaml | 2.79 KB | 885a6199345d964876fd214db16b75dc |
| statistics/ |