TF_ChIP-seq_ENCSR690FIA
TF_ChIP-seq ENCSR690FIA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EED" and target="EED"]
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| Id: | TF_ChIP-seq/ENCSR690FIA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR690FIA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EED" and target="EED"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EED output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN549QVN|/analyses/ENCAN549QVN/} has in progress subobject document {851c0a8a-e026-44d9-95e0-632ecf717649|/documents/851c0a8a-e026-44d9-95e0-632ecf717649/} audit_internal_action: Released analysis {ENCAN549QVN|/analyses/ENCAN549QVN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF770AVY|/files/ENCFF770AVY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF770AVY|/files/ENCFF770AVY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF828YEE|/files/ENCFF828YEE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF828YEE|/files/ENCFF828YEE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR690FIA | float |
TF_ChIP-seq_ENCSR690FIA |
TF_ChIP-seq ENCSR690FIA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EED" and target="EED"]
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[16.8, 507] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF405LDS.bed.gz | 225.43 KB | 23e624b653e860aead3b04a4b326cd49 |
| ENCFF405LDS.bed.gz.dvc | 100.0 B | bc425a90d2605b454dcad2e77133de8c |
| ENCFF405LDS.tabix.bed.gz | 169.63 KB | b56621a6606b2db16a41fbfd10d1274e |
| ENCFF405LDS.tabix.bed.gz.dvc | 106.0 B | 2d537cc3f69db12ba466b0ee2c6718be |
| ENCFF405LDS.tabix.bed.gz.tbi | 77.97 KB | 20da58a9c601ccbdb6e0005cae674cbc |
| ENCFF405LDS.tabix.bed.gz.tbi.dvc | 109.0 B | 4b7715444acdb5806322899ba64394a8 |
| genomic_resource.yaml | 4.43 KB | 179226eda84df3e2abd45eb3bf53ddd7 |
| genomic_resource_original.yaml | 4.27 KB | b6b5fa87c544a546d76d27e834dd769f |
| statistics/ |