TF_ChIP-seq_ENCSR685GGQ
TF_ChIP-seq ENCSR685GGQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"]
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| Id: | TF_ChIP-seq/ENCSR685GGQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR685GGQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JUNB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN577RPO|/analyses/ENCAN577RPO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF917KJT|/files/ENCFF917KJT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF917KJT|/files/ENCFF917KJT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.33. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF828TUW|/files/ENCFF828TUW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.64 and a self consistency ratio of 3.66. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR685GGQ | float |
TF_ChIP-seq_ENCSR685GGQ |
TF_ChIP-seq ENCSR685GGQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB" and target="JUNB"]
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[10.7, 487] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF828TUW.bed.gz | 147.58 KB | 39e02fe1d0a6783ca12ffc6ec2cdf1a6 |
| ENCFF828TUW.bed.gz.dvc | 100.0 B | 9e52b05dc3545ecf9deb0ab5e317e05a |
| ENCFF828TUW.tabix.bed.gz | 104.84 KB | 1b62add5b074ca4ca7b3b09c0377da05 |
| ENCFF828TUW.tabix.bed.gz.dvc | 106.0 B | 85ae64b9f8578d986b1fe3d30c3237da |
| ENCFF828TUW.tabix.bed.gz.tbi | 64.0 KB | e92d620a14d4aba1915422d575e2beaa |
| ENCFF828TUW.tabix.bed.gz.tbi.dvc | 109.0 B | ba6e29ed506f36567d48fee23551a44e |
| genomic_resource.yaml | 3.48 KB | 4312741fcf6b29570fdbfeb43bce8d1d |
| genomic_resource_original.yaml | 3.32 KB | f17f1d71910235ac41bc9cf10aa39f39 |
| statistics/ |