TF_ChIP-seq_ENCSR682AAS
TF_ChIP-seq ENCSR682AAS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF668" and target="ZNF668"]
×
| Id: | TF_ChIP-seq/ENCSR682AAS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR682AAS [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF668" and target="ZNF668"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF668 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN449FCD|/analyses/ENCAN449FCD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF468XKX|/files/ENCFF468XKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF468XKX|/files/ENCFF468XKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF663EUJ|/files/ENCFF663EUJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF663EUJ|/files/ENCFF663EUJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.71. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR682AAS | float |
TF_ChIP-seq_ENCSR682AAS |
TF_ChIP-seq ENCSR682AAS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF668" and target="ZNF668"]
|
|
[22.8, 2.77e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF885HJI.bed.gz | 87.14 KB | 4919ab0f34a20cc1e9dc134f2d261e11 |
| ENCFF885HJI.bed.gz.dvc | 99.0 B | 785727d35f70340720047af117d2afa4 |
| ENCFF885HJI.tabix.bed.gz | 56.08 KB | 033e7c3f14a7fa4b2041c33ba473a84e |
| ENCFF885HJI.tabix.bed.gz.dvc | 105.0 B | e30d53a83254c51dd58358ea957cf536 |
| ENCFF885HJI.tabix.bed.gz.tbi | 39.81 KB | ab95f05ceecd0ca6475d35b6e7ba00f1 |
| ENCFF885HJI.tabix.bed.gz.tbi.dvc | 109.0 B | b7e7dbc61b2b1bd86a6544a02920932b |
| genomic_resource.yaml | 4.24 KB | aeebf3309b7cc05af6d6a9116e9beb22 |
| genomic_resource_original.yaml | 4.07 KB | 1a5146dee54c277fa95fe9c273ee1f9f |
| statistics/ |