TF_ChIP-seq_ENCSR681KXT
TF_ChIP-seq ENCSR681KXT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF329" and target="ZNF329"]
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| Id: | TF_ChIP-seq/ENCSR681KXT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR681KXT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF329" and target="ZNF329"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF329 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN466XDH|/analyses/ENCAN466XDH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF830AUJ|/files/ENCFF830AUJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 19504989 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF329-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF674HEV|/files/ENCFF674HEV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 13352555 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF329-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF830AUJ|/files/ENCFF830AUJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF830AUJ|/files/ENCFF830AUJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.21. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF674HEV|/files/ENCFF674HEV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF674HEV|/files/ENCFF674HEV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR681KXT | float |
TF_ChIP-seq_ENCSR681KXT |
TF_ChIP-seq ENCSR681KXT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF329" and target="ZNF329"]
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[6.63, 764] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF731RBX.bed.gz | 195.61 KB | b2ac43d391a96a66f6dadf1e782f92b1 |
| ENCFF731RBX.bed.gz.dvc | 100.0 B | 2412e1cf88c928a9628de11ac237751c |
| ENCFF731RBX.tabix.bed.gz | 152.51 KB | fbecf685ac17ea812f5046107c2c7e68 |
| ENCFF731RBX.tabix.bed.gz.dvc | 106.0 B | 37d80564a130fdc1886550b7615a3081 |
| ENCFF731RBX.tabix.bed.gz.tbi | 74.53 KB | b39cfcc3519c7dcc717be5ed7996eeb2 |
| ENCFF731RBX.tabix.bed.gz.tbi.dvc | 109.0 B | 835cec3ff72bf1a1b97243cd8fb0ec1f |
| genomic_resource.yaml | 5.21 KB | 8488993ead24c21aeb57445cc70e846d |
| genomic_resource_original.yaml | 5.04 KB | a904acb7147882edcc1ce431868f9dbb |
| statistics/ |