TF_ChIP-seq_ENCSR678KUJ
TF_ChIP-seq ENCSR678KUJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"]
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| Id: | TF_ChIP-seq/ENCSR678KUJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR678KUJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN085PPS|/analyses/ENCAN085PPS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF599GJI|/files/ENCFF599GJI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF599GJI|/files/ENCFF599GJI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF711FFB|/files/ENCFF711FFB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF711FFB|/files/ENCFF711FFB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.07. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF216KLB|/files/ENCFF216KLB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.40. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR678KUJ | float |
TF_ChIP-seq_ENCSR678KUJ |
TF_ChIP-seq ENCSR678KUJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"]
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[13.2, 997] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF216KLB.bed.gz | 707.18 KB | 14b58aaa66df25c9219d4349080bac9c |
| ENCFF216KLB.bed.gz.dvc | 100.0 B | ef3bd1c624bea025ec723883845e4f31 |
| ENCFF216KLB.tabix.bed.gz | 643.48 KB | b866f0bf8329fec19704d40c0d5675a6 |
| ENCFF216KLB.tabix.bed.gz.dvc | 106.0 B | be95f18337490de67328c94d635f9380 |
| ENCFF216KLB.tabix.bed.gz.tbi | 160.74 KB | 7229e595111ec3ed24ee8d7fccd748cd |
| ENCFF216KLB.tabix.bed.gz.tbi.dvc | 110.0 B | 7eee0439ab7a9ed5088b6f631147cc0f |
| genomic_resource.yaml | 4.75 KB | 84b3bd97a4bc3aa4a6d5df7203710345 |
| genomic_resource_original.yaml | 4.59 KB | 72b5e64041c93b615ec6bc9b5286df3c |
| statistics/ |