TF_ChIP-seq_ENCSR674SCQ
TF_ChIP-seq ENCSR674SCQ [biosample_summary="Homo sapiens K562 stably expressing ZNF354B" and target="ZNF354B"]
×
| Id: | TF_ChIP-seq/ENCSR674SCQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR674SCQ [biosamplesummary="Homo sapiens K562 stably expressing ZNF354B" and target="ZNF354B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged ZNF354B output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN361QXT|/analyses/ENCAN361QXT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF533OBT|/files/ENCFF533OBT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF103HTZ|/files/ENCFF103HTZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF103HTZ|/files/ENCFF103HTZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.77. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF864BUV|/files/ENCFF864BUV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF864BUV|/files/ENCFF864BUV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.18. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR674SCQ | float |
TF_ChIP-seq_ENCSR674SCQ |
TF_ChIP-seq ENCSR674SCQ [biosample_summary="Homo sapiens K562 stably expressing ZNF354B" and target="ZNF354B"]
|
|
[28.8, 1.4e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF533OBT.bed.gz | 89.53 KB | 8a565b68c91fb99cf36e3acb754ad3aa |
| ENCFF533OBT.bed.gz.dvc | 99.0 B | 9d3847255e4725b3a717518895c9cf1f |
| ENCFF533OBT.tabix.bed.gz | 64.18 KB | 77eb4cd4acb47637280159863631ac2d |
| ENCFF533OBT.tabix.bed.gz.dvc | 105.0 B | 817871151e365a3e27ed0b7569ee599e |
| ENCFF533OBT.tabix.bed.gz.tbi | 40.2 KB | 36bb47a5948456a36669bc296c0571e8 |
| ENCFF533OBT.tabix.bed.gz.tbi.dvc | 109.0 B | 6df13c755adcd14e239264f0871d989d |
| genomic_resource.yaml | 4.2 KB | a9d2949ffe8134579d4981c3948cebd7 |
| genomic_resource_original.yaml | 4.08 KB | 3b186589c8e6ce3ab0731eb0c7560988 |
| statistics/ |