TF_ChIP-seq_ENCSR672OHP
TF_ChIP-seq ENCSR672OHP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR" and target="LCOR"]
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| Id: | TF_ChIP-seq/ENCSR672OHP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR672OHP [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR" and target="LCOR"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens LCOR output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN825GHP|/analyses/ENCAN825GHP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF396BIF|/files/ENCFF396BIF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF396BIF|/files/ENCFF396BIF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF449WRD|/files/ENCFF449WRD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF449WRD|/files/ENCFF449WRD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR672OHP | float |
TF_ChIP-seq_ENCSR672OHP |
TF_ChIP-seq ENCSR672OHP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR" and target="LCOR"]
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[9.07, 696] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266MUT.bed.gz | 333.45 KB | 15238935e3a89db82a84a759c7e3bc7d |
| ENCFF266MUT.bed.gz.dvc | 100.0 B | a040e99a9f537b9bd18282da2c5b06ad |
| ENCFF266MUT.tabix.bed.gz | 258.85 KB | 948785875831b7a6837f5dd7243f592a |
| ENCFF266MUT.tabix.bed.gz.dvc | 106.0 B | 6d5416e3e845d60f5175bcbfd0421530 |
| ENCFF266MUT.tabix.bed.gz.tbi | 104.24 KB | 6ab933dacccb6121387606787750b85a |
| ENCFF266MUT.tabix.bed.gz.tbi.dvc | 110.0 B | eae624c079a765e5715afa503f6b6800 |
| genomic_resource.yaml | 4.22 KB | e58e412937d1d2f5704bb9cf7b040844 |
| genomic_resource_original.yaml | 4.06 KB | 8ea3859b34161b27de0c22fa3592eb80 |
| statistics/ |