TF_ChIP-seq_ENCSR670UEX
TF_ChIP-seq ENCSR670UEX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710" and target="ZNF710"]
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| Id: | TF_ChIP-seq/ENCSR670UEX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR670UEX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710" and target="ZNF710"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN936XIW|/analyses/ENCAN936XIW/} has in progress subobject document {c5e3a23a-633a-4ff1-be1a-f25fafb5b1f9|/documents/c5e3a23a-633a-4ff1-be1a-f25fafb5b1f9/} audit_internal_action: Released analysis {ENCAN936XIW|/analyses/ENCAN936XIW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF236BDQ|/files/ENCFF236BDQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF236BDQ|/files/ENCFF236BDQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138TZJ|/files/ENCFF138TZJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138TZJ|/files/ENCFF138TZJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.33. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF216JWP|/files/ENCFF216JWP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 3.26. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF170JWO|/files/ENCFF170JWO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 3.26. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR670UEX | float |
TF_ChIP-seq_ENCSR670UEX |
TF_ChIP-seq ENCSR670UEX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710" and target="ZNF710"]
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[10.8, 469] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF216JWP.bed.gz | 410.53 KB | 69df82d08ea5a2377f812f0874dfc4a4 |
| ENCFF216JWP.bed.gz.dvc | 100.0 B | fe83cc2b0078657abc7e7769889c744e |
| ENCFF216JWP.tabix.bed.gz | 321.79 KB | 503c179615b774b1778a49976a62726f |
| ENCFF216JWP.tabix.bed.gz.dvc | 106.0 B | 364caa94d2300b5858d70027f18713d9 |
| ENCFF216JWP.tabix.bed.gz.tbi | 126.64 KB | e433f2d49fb59259cb94105f762aa23b |
| ENCFF216JWP.tabix.bed.gz.tbi.dvc | 110.0 B | 7aa89dd32a1a37f5169fda9a85841150 |
| genomic_resource.yaml | 5.49 KB | c1773dbf4cd1ff05f49c5d7308696dd7 |
| genomic_resource_original.yaml | 5.33 KB | efe3e8c474ce8c69c67500cce2be8d80 |
| statistics/ |