TF_ChIP-seq_ENCSR670JDQ
TF_ChIP-seq ENCSR670JDQ [biosample_summary="Homo sapiens K562" and target="RB1"]
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| Id: | TF_ChIP-seq/ENCSR670JDQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR670JDQ [biosamplesummary="Homo sapiens K562" and target="RB1"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF328QZM|/files/ENCFF328QZM/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN842ZAO|/analyses/ENCAN842ZAO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF706XFF|/files/ENCFF706XFF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19476085 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RB1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706XFF|/files/ENCFF706XFF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706XFF|/files/ENCFF706XFF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR670JDQ | float |
TF_ChIP-seq_ENCSR670JDQ |
TF_ChIP-seq ENCSR670JDQ [biosample_summary="Homo sapiens K562" and target="RB1"]
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[10.2, 925] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF328QZM.bed.gz | 461.59 KB | a03eb83debb7f343eca8e52bf576135f |
| ENCFF328QZM.bed.gz.dvc | 100.0 B | 6f3e4ad7a2d9d2fd44516287f9da698e |
| ENCFF328QZM.tabix.bed.gz | 315.36 KB | 85e33997e0d6320a3583f52d204a1d36 |
| ENCFF328QZM.tabix.bed.gz.dvc | 106.0 B | b5ad783a7f229420fe7d68a8af588a42 |
| ENCFF328QZM.tabix.bed.gz.tbi | 148.04 KB | 7d0b44c051ae21c97dabec6a54fe8a78 |
| ENCFF328QZM.tabix.bed.gz.tbi.dvc | 110.0 B | 105f3b7cbf784fee34fb9e6ab7c61491 |
| genomic_resource.yaml | 3.32 KB | 631895d580670e1f94daa00bac737a66 |
| genomic_resource_original.yaml | 3.23 KB | 06ada5ebda9beba7f4e34d49b459234a |
| statistics/ |