TF_ChIP-seq_ENCSR670FDA
TF_ChIP-seq ENCSR670FDA [biosample_summary="Homo sapiens K562" and target="NFATC3"]
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| Id: | TF_ChIP-seq/ENCSR670FDA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR670FDA [biosamplesummary="Homo sapiens K562" and target="NFATC3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN341UKF|/analyses/ENCAN341UKF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF082EPO|/files/ENCFF082EPO/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF412AMR|/files/ENCFF412AMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF412AMR|/files/ENCFF412AMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF279QAV|/files/ENCFF279QAV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF279QAV|/files/ENCFF279QAV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR670FDA | float |
TF_ChIP-seq_ENCSR670FDA |
TF_ChIP-seq ENCSR670FDA [biosample_summary="Homo sapiens K562" and target="NFATC3"]
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[11.9, 2.85e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF082EPO.bed.gz | 125.05 KB | fe01466152fd2e904e47cfeeb6d3c4ab |
| ENCFF082EPO.bed.gz.dvc | 100.0 B | 08be922b0b530e8e1b71bb855823708e |
| ENCFF082EPO.tabix.bed.gz | 85.97 KB | 62f3f6e654156856ac47bcbc6f5aedf1 |
| ENCFF082EPO.tabix.bed.gz.dvc | 105.0 B | 6d7664e939a17889f298bcf5895857e1 |
| ENCFF082EPO.tabix.bed.gz.tbi | 52.74 KB | 4d96b6f07e121fc225ba35ee17e3f8f0 |
| ENCFF082EPO.tabix.bed.gz.tbi.dvc | 109.0 B | 3eb50c5961c2999abccdf8cb480c357c |
| genomic_resource.yaml | 4.13 KB | 804dbf4f1b4938c8ce1b4d650a7981e6 |
| genomic_resource_original.yaml | 4.03 KB | 62fb7651e3166554d0a3877e65174daa |
| statistics/ |