TF_ChIP-seq_ENCSR669NFS
TF_ChIP-seq ENCSR669NFS [biosample_summary="Homo sapiens K562" and target="ARNT"]
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| Id: | TF_ChIP-seq/ENCSR669NFS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR669NFS [biosamplesummary="Homo sapiens K562" and target="ARNT"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN601LJH|/analyses/ENCAN601LJH/} has in progress subobject document {18b93594-86c1-4449-a073-dfb54406ec82|/documents/18b93594-86c1-4449-a073-dfb54406ec82/} audit_internal_action: Released analysis {ENCAN601LJH|/analyses/ENCAN601LJH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF272TFI|/files/ENCFF272TFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17996124 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ARNT-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF966JXF|/files/ENCFF966JXF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19267129 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ARNT-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272TFI|/files/ENCFF272TFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF272TFI|/files/ENCFF272TFI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR669NFS | float |
TF_ChIP-seq_ENCSR669NFS |
TF_ChIP-seq ENCSR669NFS [biosample_summary="Homo sapiens K562" and target="ARNT"]
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[9.74, 3.97e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF075OIT.bed.gz | 80.85 KB | db4a19145e2b2144a4e9498d7418fe63 |
| ENCFF075OIT.bed.gz.dvc | 99.0 B | e918d9606ba1fc59602baecd47c63a18 |
| ENCFF075OIT.tabix.bed.gz | 55.07 KB | 3801eeaf574e714b09e23b2e5594872c |
| ENCFF075OIT.tabix.bed.gz.dvc | 105.0 B | 78297c5956faabe047f217b9c1f1499d |
| ENCFF075OIT.tabix.bed.gz.tbi | 39.37 KB | 78c5c62e8e3179f6d693177358c56aa5 |
| ENCFF075OIT.tabix.bed.gz.tbi.dvc | 109.0 B | 5c62298fbe625431140e5dede93f0161 |
| genomic_resource.yaml | 4.41 KB | f50b0b87b4f799eee996bc32d207f142 |
| genomic_resource_original.yaml | 4.32 KB | 6464b408b819a16b357818be7a3c784d |
| statistics/ |