TF_ChIP-seq_ENCSR667WDR
TF_ChIP-seq ENCSR667WDR [biosample_summary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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| Id: | TF_ChIP-seq/ENCSR667WDR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR667WDR [biosamplesummary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN861LIP|/analyses/ENCAN861LIP/} has in progress subobject document {03a008c1-9c75-4ca2-b6a0-ae70f2fae547|/documents/03a008c1-9c75-4ca2-b6a0-ae70f2fae547/} audit_internal_action: Released analysis {ENCAN861LIP|/analyses/ENCAN861LIP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF885AOD|/files/ENCFF885AOD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF885AOD|/files/ENCFF885AOD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.64. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF423PPQ|/files/ENCFF423PPQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF423PPQ|/files/ENCFF423PPQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR667WDR | float |
TF_ChIP-seq_ENCSR667WDR |
TF_ChIP-seq ENCSR667WDR [biosample_summary="Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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[8.21, 339] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF737BYI.bed.gz | 244.28 KB | 9017db92999d1b699de247d35aa3c9d3 |
| ENCFF737BYI.bed.gz.dvc | 100.0 B | 9c9d82b486449ff8a979d5d164c42d62 |
| ENCFF737BYI.tabix.bed.gz | 184.03 KB | 1c77cd9cfce53aa089798d046c572e2d |
| ENCFF737BYI.tabix.bed.gz.dvc | 106.0 B | 1a8bdded77c98d7729a22e9b45d5040c |
| ENCFF737BYI.tabix.bed.gz.tbi | 95.58 KB | 27284ffd548909ae277fc8bc26d9aeec |
| ENCFF737BYI.tabix.bed.gz.tbi.dvc | 109.0 B | 363069aa28ea1d250e294d097784f492 |
| genomic_resource.yaml | 4.45 KB | 0bd89f0d8b02a1146331a031366262e8 |
| genomic_resource_original.yaml | 4.28 KB | cd7ea525dbec518afaeba12cd0a186ec |
| statistics/ |