| Id: | TF_ChIP-seq/ENCSR665KYH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR665KYH [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF521" and target="ZNF521"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF521 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF996QGV|/files/ENCFF996QGV/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN901REQ|/analyses/ENCAN901REQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF250JTL|/files/ENCFF250JTL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF250JTL|/files/ENCFF250JTL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR665KYH | float |
TF_ChIP-seq_ENCSR665KYH |
TF_ChIP-seq ENCSR665KYH [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF521" and target="ZNF521"]
|
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[15.5, 622] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF996QGV.bed.gz | 32.61 KB | 8b35964b2112e0a2264cc3133597e0a8 |
| ENCFF996QGV.bed.gz.dvc | 99.0 B | 310478a5be562bea28ba0cd2abe2fce0 |
| ENCFF996QGV.tabix.bed.gz | 21.46 KB | 3c37dcc99732e6e00a9697ac6ae90a31 |
| ENCFF996QGV.tabix.bed.gz.dvc | 105.0 B | 5c6e044edf8c22a2677c00057ba377f7 |
| ENCFF996QGV.tabix.bed.gz.tbi | 19.78 KB | e510da16a92c11bab8affc2870ed8b0f |
| ENCFF996QGV.tabix.bed.gz.tbi.dvc | 109.0 B | 99562a1dd26e4f4b5bd46045f8e7fbdf |
| genomic_resource.yaml | 3.25 KB | ceaf83e5a0d0bc316a36da4adbf0d0ca |
| genomic_resource_original.yaml | 3.07 KB | 3e2626ae4515237236fcc5fc22e6388f |
| statistics/ |