type: position_score
table:
  filename: ENCFF141SMI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR664POU
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR664POU [TISSUE: Homo sapiens GM12878, TARGET: RELA]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN547GKD|/analyses/ENCAN547GKD/} has in progress\
    \ subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF141SMI|/files/ENCFF141SMI/} processed by ChIP-seq\
    \ ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency\
    \ ratio of 4.06. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR664POU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR664POU
    date_created: '2014-07-02T22:41:07.981878+00:00'
    date_released: '2014-07-07'
    submitter_comment: The ENCODE 3 hg19 analysis of this dataset was revoked because
      it did not pass replicate concordance by IDR. The dataset has since been released
      because the newest ENCODE 4 GRCh38 does meet the uniform quality standards.
    target: RELA
