| Id: | TF_ChIP-seq/ENCSR664FGR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR664FGR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPBP1L1" and target="GPBP1L1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GPBP1L1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN840SZG|/analyses/ENCAN840SZG/} has in progress subobject document {2b01c6af-2d3e-4c83-8830-3b1f7a2876e5|/documents/2b01c6af-2d3e-4c83-8830-3b1f7a2876e5/} audit_internal_action: Released analysis {ENCAN840SZG|/analyses/ENCAN840SZG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF221SCE|/files/ENCFF221SCE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF221SCE|/files/ENCFF221SCE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF122LVU|/files/ENCFF122LVU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF122LVU|/files/ENCFF122LVU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.43. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR664FGR | float |
TF_ChIP-seq_ENCSR664FGR |
TF_ChIP-seq ENCSR664FGR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPBP1L1" and target="GPBP1L1"]
|
 |
[8.52, 116] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF019SZJ.bed.gz | 867.0 B | 1a39742f1d4b6f89e4310f4bb0f9e0b8 |
| ENCFF019SZJ.bed.gz.dvc | 97.0 B | f7a74e948c9b9df6af70d8869bb1a055 |
| ENCFF019SZJ.tabix.bed.gz | 742.0 B | fe02089813c68444b1146ef682fa0077 |
| ENCFF019SZJ.tabix.bed.gz.dvc | 103.0 B | 8ebd5f33668b5c3117d9cf37058109dc |
| ENCFF019SZJ.tabix.bed.gz.tbi | 2.02 KB | 441cdd70a648b633a2309e05c6974769 |
| ENCFF019SZJ.tabix.bed.gz.tbi.dvc | 108.0 B | 8676f0440b309424e17ae92f55223ee5 |
| genomic_resource.yaml | 4.46 KB | 0096d0c900a40e978ea2588b2cc528f3 |
| genomic_resource_original.yaml | 4.29 KB | a4b449b65020cec6eb045c5c5f0914c5 |
| statistics/ |