TF_ChIP-seq_ENCSR663ZZZ
TF_ChIP-seq ENCSR663ZZZ [biosample_summary="Homo sapiens MCF-7" and target="MNT"]
×
| Id: | TF_ChIP-seq/ENCSR663ZZZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR663ZZZ [biosamplesummary="Homo sapiens MCF-7" and target="MNT"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN279TPS|/analyses/ENCAN279TPS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF221NPH|/files/ENCFF221NPH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF221NPH|/files/ENCFF221NPH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.64. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF429HOM|/files/ENCFF429HOM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF429HOM|/files/ENCFF429HOM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.73. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR663ZZZ | float |
TF_ChIP-seq_ENCSR663ZZZ |
TF_ChIP-seq ENCSR663ZZZ [biosample_summary="Homo sapiens MCF-7" and target="MNT"]
|
|
[13.9, 2.71e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF628SBD.bed.gz | 608.23 KB | da9f6a09b033a047b60fe4152bb04d96 |
| ENCFF628SBD.bed.gz.dvc | 100.0 B | 24c8fbcd3cbe72cef3688d483330ba62 |
| ENCFF628SBD.tabix.bed.gz | 445.41 KB | 2ce6422844d681b2c5f81136f01d3d3e |
| ENCFF628SBD.tabix.bed.gz.dvc | 106.0 B | 812cc599f97de5dbfd54cc84d23f2c0f |
| ENCFF628SBD.tabix.bed.gz.tbi | 196.84 KB | 8fd23034e63f473c4e7757e739597e84 |
| ENCFF628SBD.tabix.bed.gz.tbi.dvc | 110.0 B | 2d8f1d6e4be4fcb61e80dafebc6170e1 |
| genomic_resource.yaml | 3.93 KB | 69ef73b8b4553a069dceb85a33bd6bd4 |
| genomic_resource_original.yaml | 3.84 KB | 02ddb130a68adb0c78b255fd6e87740e |
| statistics/ |