TF_ChIP-seq_ENCSR663NFC
TF_ChIP-seq ENCSR663NFC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B" and target="STAT5B"]
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| Id: | TF_ChIP-seq/ENCSR663NFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR663NFC [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B" and target="STAT5B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN590SFC|/analyses/ENCAN590SFC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF497ADV|/files/ENCFF497ADV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF497ADV|/files/ENCFF497ADV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.94. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF289VAI|/files/ENCFF289VAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF289VAI|/files/ENCFF289VAI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR663NFC | float |
TF_ChIP-seq_ENCSR663NFC |
TF_ChIP-seq ENCSR663NFC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B" and target="STAT5B"]
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[13.2, 517] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF122FTW.bed.gz | 12.12 KB | 421d6b795d4094e484dbf5dec6b16447 |
| ENCFF122FTW.bed.gz.dvc | 99.0 B | 6cc2957883983e881b828c482e9b4dc4 |
| ENCFF122FTW.tabix.bed.gz | 7.57 KB | 5905c8942d8c5b21dea543d616c452b1 |
| ENCFF122FTW.tabix.bed.gz.dvc | 104.0 B | 2db776acb77d6a9ebfe5ff8249c0454d |
| ENCFF122FTW.tabix.bed.gz.tbi | 10.41 KB | 27c1feff2421e8dff8425d7c884784e8 |
| ENCFF122FTW.tabix.bed.gz.tbi.dvc | 109.0 B | fa5b51fbc3faa787410c4208e3c36295 |
| genomic_resource.yaml | 4.24 KB | 9866b1b4f43ecfda6eb2351d2460cdd2 |
| genomic_resource_original.yaml | 4.07 KB | 3b1ae3e388e19be6c6375d23c8a3e055 |
| statistics/ |