TF_ChIP-seq_ENCSR663CTC
TF_ChIP-seq ENCSR663CTC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572" and target="ZNF572"]
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| Id: | TF_ChIP-seq/ENCSR663CTC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR663CTC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572" and target="ZNF572"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN844SVB|/analyses/ENCAN844SVB/} has in progress subobject document {84ced862-9b4c-4b69-8bb1-779465ed318a|/documents/84ced862-9b4c-4b69-8bb1-779465ed318a/} audit_internal_action: Released analysis {ENCAN844SVB|/analyses/ENCAN844SVB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF759TBF|/files/ENCFF759TBF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF759TBF|/files/ENCFF759TBF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.75. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF279YAH|/files/ENCFF279YAH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF279YAH|/files/ENCFF279YAH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR663CTC | float |
TF_ChIP-seq_ENCSR663CTC |
TF_ChIP-seq ENCSR663CTC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572" and target="ZNF572"]
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[14.5, 468] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF841YHN.bed.gz | 213.47 KB | 5e1c61c9a03043edef7de7311a877f1f |
| ENCFF841YHN.bed.gz.dvc | 100.0 B | e6f7e58fdd50b54a63848645a94e8b95 |
| ENCFF841YHN.tabix.bed.gz | 154.3 KB | 5417a6f99e2edfd804c99cbfc900735f |
| ENCFF841YHN.tabix.bed.gz.dvc | 106.0 B | c9a7f5003442549f0e5b94ee3e9d7fe4 |
| ENCFF841YHN.tabix.bed.gz.tbi | 73.55 KB | 5534c8f581053edab351f4c3397949c1 |
| ENCFF841YHN.tabix.bed.gz.tbi.dvc | 109.0 B | 40d195750764751079842174c11cb82f |
| genomic_resource.yaml | 4.45 KB | eced2d078ae738121a0305ec269667e0 |
| genomic_resource_original.yaml | 4.29 KB | 6c953ea7d59653f559d42573e2266a68 |
| statistics/ |