TF_ChIP-seq_ENCSR661IKO
TF_ChIP-seq ENCSR661IKO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1" and target="TRAFD1"]
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| Id: | TF_ChIP-seq/ENCSR661IKO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR661IKO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1" and target="TRAFD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN337ZPZ|/analyses/ENCAN337ZPZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN337ZPZ|/analyses/ENCAN337ZPZ/} has in progress subobject document {20aa231d-4d23-4ca5-b4a3-53ca54639ee1|/documents/20aa231d-4d23-4ca5-b4a3-53ca54639ee1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF241COZ|/files/ENCFF241COZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF241COZ|/files/ENCFF241COZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.11. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF503IOR|/files/ENCFF503IOR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.29 and a self consistency ratio of 5.40. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF355OOY|/files/ENCFF355OOY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.29 and a self consistency ratio of 5.40. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR661IKO | float |
TF_ChIP-seq_ENCSR661IKO |
TF_ChIP-seq ENCSR661IKO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1" and target="TRAFD1"]
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[9.92, 372] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF503IOR.bed.gz | 103.16 KB | e80f9876299bff23d0e57901a65a028a |
| ENCFF503IOR.bed.gz.dvc | 100.0 B | 0cb448db227ff42f7b6698048557b573 |
| ENCFF503IOR.tabix.bed.gz | 76.42 KB | 2ea2759b63ce3605c636e05699a3067e |
| ENCFF503IOR.tabix.bed.gz.dvc | 105.0 B | 8e35caa0654b908f906397f5bce984ef |
| ENCFF503IOR.tabix.bed.gz.tbi | 42.07 KB | 6eb388a78f7e414a6f3275a8a505c9d9 |
| ENCFF503IOR.tabix.bed.gz.tbi.dvc | 109.0 B | f0f832cdb84767e2f002b08dab723904 |
| genomic_resource.yaml | 4.23 KB | ef97010b018316284991119f1abb3b66 |
| genomic_resource_original.yaml | 4.06 KB | 82e690765f483efb481304e629f46312 |
| statistics/ |