TF_ChIP-seq_ENCSR660RNO
TF_ChIP-seq ENCSR660RNO [biosample_summary="Homo sapiens K562" and target="KDM4B"]
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| Id: | TF_ChIP-seq/ENCSR660RNO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR660RNO [biosamplesummary="Homo sapiens K562" and target="KDM4B"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF470RHZ|/files/ENCFF470RHZ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN676IQX|/analyses/ENCAN676IQX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF791VBW|/files/ENCFF791VBW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF791VBW|/files/ENCFF791VBW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.30. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF991ETB|/files/ENCFF991ETB/}, {ENCFF755SAJ|/files/ENCFF755SAJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 6.22 and a self consistency ratio of 1.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF470RHZ|/files/ENCFF470RHZ/}, {ENCFF267DTG|/files/ENCFF267DTG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 6.22 and a self consistency ratio of 1.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR660RNO | float |
TF_ChIP-seq_ENCSR660RNO |
TF_ChIP-seq ENCSR660RNO [biosample_summary="Homo sapiens K562" and target="KDM4B"]
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[14.8, 1.9e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF470RHZ.bed.gz | 19.96 KB | 51a09c0515ea8af92993d48e3d444f96 |
| ENCFF470RHZ.bed.gz.dvc | 99.0 B | 9af3f8e98d9a709e29fc1e8eb879d224 |
| ENCFF470RHZ.tabix.bed.gz | 12.72 KB | 2da87f9ba609dda22f0961b065e3e92d |
| ENCFF470RHZ.tabix.bed.gz.dvc | 105.0 B | 7241fe6c303a02ed49540467b3009971 |
| ENCFF470RHZ.tabix.bed.gz.tbi | 13.34 KB | 67b894217c808790f41ded72a2f75aa7 |
| ENCFF470RHZ.tabix.bed.gz.tbi.dvc | 109.0 B | 99d39ec0b9ef35fe40f63f0b4b36b6fc |
| genomic_resource.yaml | 3.96 KB | aa6e50c255b1b60ff1da15086ad55b99 |
| genomic_resource_original.yaml | 3.87 KB | 12c10ddd79ec6c2f827803bb8535fbd8 |
| statistics/ |