TF_ChIP-seq_ENCSR660ENW
TF_ChIP-seq ENCSR660ENW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2" and target="CAMTA2"]
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| Id: | TF_ChIP-seq/ENCSR660ENW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR660ENW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2" and target="CAMTA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN522RXN|/analyses/ENCAN522RXN/} has in progress subobject document {8c7b13d5-1fdd-45a7-aab4-bd9c7a0460f2|/documents/8c7b13d5-1fdd-45a7-aab4-bd9c7a0460f2/} audit_internal_action: Released analysis {ENCAN522RXN|/analyses/ENCAN522RXN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF867HLO|/files/ENCFF867HLO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF867HLO|/files/ENCFF867HLO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF993UUN|/files/ENCFF993UUN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF993UUN|/files/ENCFF993UUN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.98. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF333PIQ|/files/ENCFF333PIQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.64 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF305ZLM|/files/ENCFF305ZLM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.64 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR660ENW | float |
TF_ChIP-seq_ENCSR660ENW |
TF_ChIP-seq ENCSR660ENW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2" and target="CAMTA2"]
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[11.5, 462] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF333PIQ.bed.gz | 152.01 KB | 668dfdaba0997ed7668d9c6917ab4491 |
| ENCFF333PIQ.bed.gz.dvc | 100.0 B | 612421b9e22fca6d367b799aebc53fd9 |
| ENCFF333PIQ.tabix.bed.gz | 114.74 KB | a14b1c63f6d1d13f710089bb582b4734 |
| ENCFF333PIQ.tabix.bed.gz.dvc | 106.0 B | 36a59cd2d928c7754162094d409f0603 |
| ENCFF333PIQ.tabix.bed.gz.tbi | 58.1 KB | ea954355595f1c5ff52863ec091c8354 |
| ENCFF333PIQ.tabix.bed.gz.tbi.dvc | 109.0 B | d3c681f501a8d74acd1d9778b47c590a |
| genomic_resource.yaml | 5.49 KB | a9480b8076ac1cd1bc46cd4c75654863 |
| genomic_resource_original.yaml | 5.33 KB | d093a7505a39ed5dfa116579ccf5f8a7 |
| statistics/ |