TF_ChIP-seq_ENCSR659CCI
TF_ChIP-seq ENCSR659CCI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"]
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| Id: | TF_ChIP-seq/ENCSR659CCI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR659CCI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN328IWP|/analyses/ENCAN328IWP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF716XGK|/files/ENCFF716XGK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF716XGK|/files/ENCFF716XGK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF981NOA|/files/ENCFF981NOA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF981NOA|/files/ENCFF981NOA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF516ZWP|/files/ENCFF516ZWP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.45 and a self consistency ratio of 2.60. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR659CCI | float |
TF_ChIP-seq_ENCSR659CCI |
TF_ChIP-seq ENCSR659CCI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1" and target="FOXK1"]
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[14.3, 390] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF516ZWP.bed.gz | 142.83 KB | 75c1c9c3f112abc93a360893ca845141 |
| ENCFF516ZWP.bed.gz.dvc | 100.0 B | 9f50d082b0bd31174c89f780fd769e49 |
| ENCFF516ZWP.tabix.bed.gz | 102.46 KB | 44c157a8e1a92f6ae7bbdfa2afcfb746 |
| ENCFF516ZWP.tabix.bed.gz.dvc | 106.0 B | 1aaa69331127f72ff71506cb1a78ec61 |
| ENCFF516ZWP.tabix.bed.gz.tbi | 54.27 KB | a80a111cf39c5728d2a99ece852de2d0 |
| ENCFF516ZWP.tabix.bed.gz.tbi.dvc | 109.0 B | f53738807e3e594d6ccfb8f412b5b518 |
| genomic_resource.yaml | 4.75 KB | 69548254ddcb3ff364a68f2f4578b646 |
| genomic_resource_original.yaml | 4.59 KB | ba0d2e7f90d929c7a7ea5d599b460d37 |
| statistics/ |