TF_ChIP-seq_ENCSR658WFQ
TF_ChIP-seq ENCSR658WFQ [biosample_summary="Homo sapiens K562" and target="NCOA1"]
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| Id: | TF_ChIP-seq/ENCSR658WFQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR658WFQ [biosamplesummary="Homo sapiens K562" and target="NCOA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN330TQN|/analyses/ENCAN330TQN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF875UQI|/files/ENCFF875UQI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19966703 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NCOA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF901AKT|/files/ENCFF901AKT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19160128 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NCOA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF875UQI|/files/ENCFF875UQI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF875UQI|/files/ENCFF875UQI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF901AKT|/files/ENCFF901AKT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF901AKT|/files/ENCFF901AKT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR658WFQ | float |
TF_ChIP-seq_ENCSR658WFQ |
TF_ChIP-seq ENCSR658WFQ [biosample_summary="Homo sapiens K562" and target="NCOA1"]
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[31.5, 1.63e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF297JZQ.bed.gz | 357.74 KB | d78ea51f6aa867de601e3cf900656fb7 |
| ENCFF297JZQ.bed.gz.dvc | 100.0 B | 692a2a0145472ca3305c954fcf038d4f |
| ENCFF297JZQ.tabix.bed.gz | 302.02 KB | 41a66a0964cd22f9c0d37c94d147bc57 |
| ENCFF297JZQ.tabix.bed.gz.dvc | 106.0 B | 7a353e3f4951e15b792e0cede32b5eed |
| ENCFF297JZQ.tabix.bed.gz.tbi | 135.57 KB | 62b57665e5fad6cd0c0fdd3b55ad4980 |
| ENCFF297JZQ.tabix.bed.gz.tbi.dvc | 110.0 B | 0fe6c8112b661c3bd8859b485729392d |
| genomic_resource.yaml | 5.47 KB | 288c6900501cc6c0682dbbb2969dce4f |
| genomic_resource_original.yaml | 5.38 KB | 41dc5af081bfa3ab174ad2438c44b5fb |
| statistics/ |