TF_ChIP-seq_ENCSR658UQD
TF_ChIP-seq ENCSR658UQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZUP1" and target="ZUFSP"]
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| Id: | TF_ChIP-seq/ENCSR658UQD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR658UQD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZUP1" and target="ZUFSP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZUP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN778OEC|/analyses/ENCAN778OEC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF715AIO|/files/ENCFF715AIO/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF715AIO|/files/ENCFF715AIO/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF562LFW|/files/ENCFF562LFW/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF562LFW|/files/ENCFF562LFW/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.35. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF594JNI|/files/ENCFF594JNI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 3.38. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR658UQD | float |
TF_ChIP-seq_ENCSR658UQD |
TF_ChIP-seq ENCSR658UQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZUP1" and target="ZUFSP"]
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[9.22, 301] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF594JNI.bed.gz | 10.99 KB | 8eaf017e562bd946c34adf3f9f43dfc7 |
| ENCFF594JNI.bed.gz.dvc | 99.0 B | 366f27c3ec68bd954f96f57c8f70f15f |
| ENCFF594JNI.tabix.bed.gz | 7.42 KB | d2f3c9be45f24e223972e2cde566cad1 |
| ENCFF594JNI.tabix.bed.gz.dvc | 104.0 B | 99e9d1fffaf675c5420d6dfec42b017e |
| ENCFF594JNI.tabix.bed.gz.tbi | 9.07 KB | 4d1d7d674b977f0e263b3b1ca19b2a9f |
| ENCFF594JNI.tabix.bed.gz.tbi.dvc | 108.0 B | c532297bcbeb7754ce3b6371edecf97f |
| genomic_resource.yaml | 4.75 KB | 82929d327da80b2d37ae5c28b6a4760e |
| genomic_resource_original.yaml | 4.58 KB | c9ce50ba4c26f0b63236e56b23134f76 |
| statistics/ |