| Id: | TF_ChIP-seq/ENCSR658GYQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR658GYQ [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2" and target="TSC22D2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN007MOI|/analyses/ENCAN007MOI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF244IDQ|/files/ENCFF244IDQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF244IDQ|/files/ENCFF244IDQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF874BAI|/files/ENCFF874BAI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF874BAI|/files/ENCFF874BAI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.10. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR658GYQ | float |
TF_ChIP-seq_ENCSR658GYQ |
TF_ChIP-seq ENCSR658GYQ [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2" and target="TSC22D2"]
|
 |
[16.1, 2.7e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF737RZJ.bed.gz | 80.47 KB | b5c649cd9a100fe80080b1ff69a196b7 |
| ENCFF737RZJ.bed.gz.dvc | 99.0 B | 3619bd022eb17f8e2803b3222db157ab |
| ENCFF737RZJ.tabix.bed.gz | 52.64 KB | 9fdd4c376a196a4c20efe7ccd2bbd6fb |
| ENCFF737RZJ.tabix.bed.gz.dvc | 105.0 B | 029609fe90e0b99a7f32fefed33bdd38 |
| ENCFF737RZJ.tabix.bed.gz.tbi | 30.96 KB | 1f3600842ec31892a797f7b32a1b4297 |
| ENCFF737RZJ.tabix.bed.gz.tbi.dvc | 109.0 B | 556feae7215c0aec8ef25bf4e51ab517 |
| genomic_resource.yaml | 4.36 KB | 8f2c80649c2d372273cc0623da653906 |
| genomic_resource_original.yaml | 4.2 KB | c2ebdda076709f84862d0aa8d864b751 |
| statistics/ |