TF_ChIP-seq_ENCSR657PEW
TF_ChIP-seq ENCSR657PEW [biosample_summary="Homo sapiens GM12878" and target="LARP7"]
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| Id: | TF_ChIP-seq/ENCSR657PEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR657PEW [biosamplesummary="Homo sapiens GM12878" and target="LARP7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN826NSY|/analyses/ENCAN826NSY/} has in progress subobject document {17cfa3d2-3067-41af-9079-e840c1da6210|/documents/17cfa3d2-3067-41af-9079-e840c1da6210/} audit_internal_action: Released analysis {ENCAN826NSY|/analyses/ENCAN826NSY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272NSK|/files/ENCFF272NSK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF272NSK|/files/ENCFF272NSK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.01. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF367CQI|/files/ENCFF367CQI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF367CQI|/files/ENCFF367CQI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.55. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR657PEW | float |
TF_ChIP-seq_ENCSR657PEW |
TF_ChIP-seq ENCSR657PEW [biosample_summary="Homo sapiens GM12878" and target="LARP7"]
|
|
[16.7, 1.08e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF927IGC.bed.gz | 372.12 KB | 9777a97e27b0cc89d0b38e8e9c7359e7 |
| ENCFF927IGC.bed.gz.dvc | 100.0 B | 1f9609150b3cbdf9713cb6203b0f8739 |
| ENCFF927IGC.tabix.bed.gz | 271.26 KB | e1451f194c0e01b2fa9ad25117740956 |
| ENCFF927IGC.tabix.bed.gz.dvc | 106.0 B | 26c2eb6adcbe89faae4a1fde0ad8a029 |
| ENCFF927IGC.tabix.bed.gz.tbi | 108.9 KB | 77778addea068e851f1af06e37c854aa |
| ENCFF927IGC.tabix.bed.gz.tbi.dvc | 110.0 B | 4e6175c47338de7893917fba83defcc6 |
| genomic_resource.yaml | 4.19 KB | debdebb04f0550f0910c2928f5a46649 |
| genomic_resource_original.yaml | 4.09 KB | 033b9430216cbeff316e234a4d41ce8a |
| statistics/ |