TF_ChIP-seq_ENCSR656RTA
TF_ChIP-seq ENCSR656RTA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF527" and target="ZNF527"]
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| Id: | TF_ChIP-seq/ENCSR656RTA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR656RTA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF527" and target="ZNF527"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF527 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN105BYI|/analyses/ENCAN105BYI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF282WCP|/files/ENCFF282WCP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF282WCP|/files/ENCFF282WCP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597XRI|/files/ENCFF597XRI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597XRI|/files/ENCFF597XRI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.41. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF442AHG|/files/ENCFF442AHG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.37 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR656RTA | float |
TF_ChIP-seq_ENCSR656RTA |
TF_ChIP-seq ENCSR656RTA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF527" and target="ZNF527"]
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[14.3, 336] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442AHG.bed.gz | 183.62 KB | 9f5a6ff62f990ab4e08ef47bdbb850e7 |
| ENCFF442AHG.bed.gz.dvc | 100.0 B | 43b59a114f6f629998e24ad7c80b5a26 |
| ENCFF442AHG.tabix.bed.gz | 137.2 KB | 3ce4c96e25d05ae146b8c3b1b5c305f9 |
| ENCFF442AHG.tabix.bed.gz.dvc | 106.0 B | 365b034e7578da7f65241aded4d623f0 |
| ENCFF442AHG.tabix.bed.gz.tbi | 68.91 KB | 038ed07344d2a11f97c1bf8fcee608bd |
| ENCFF442AHG.tabix.bed.gz.tbi.dvc | 109.0 B | dd6dc012454517694899570d8712dfcc |
| genomic_resource.yaml | 4.76 KB | f18b3133cf13bb4e7c88311322c05b8c |
| genomic_resource_original.yaml | 4.59 KB | c3f0ecd7c1a502821aeeb30c7327bdba |
| statistics/ |