TF_ChIP-seq_ENCSR655QNQ
TF_ChIP-seq ENCSR655QNQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REXO4" and target="REXO4"]
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| Id: | TF_ChIP-seq/ENCSR655QNQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR655QNQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REXO4" and target="REXO4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens REXO4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN964YTH|/analyses/ENCAN964YTH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF354GOA|/files/ENCFF354GOA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF354GOA|/files/ENCFF354GOA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.81. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF297ZMD|/files/ENCFF297ZMD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF297ZMD|/files/ENCFF297ZMD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.42. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF525SCQ|/files/ENCFF525SCQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 2.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR655QNQ | float |
TF_ChIP-seq_ENCSR655QNQ |
TF_ChIP-seq ENCSR655QNQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens REXO4" and target="REXO4"]
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[9.1, 349] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF525SCQ.bed.gz | 58.08 KB | 266a7134096411078578ebed2ddbe39a |
| ENCFF525SCQ.bed.gz.dvc | 99.0 B | 6965b316377bea200639e87ade922ea2 |
| ENCFF525SCQ.tabix.bed.gz | 40.43 KB | b6b1982e0c35bd40d45cc0e882d71d3e |
| ENCFF525SCQ.tabix.bed.gz.dvc | 105.0 B | 12cb41096a2bff196dc6a2d3564e176d |
| ENCFF525SCQ.tabix.bed.gz.tbi | 29.61 KB | 655be4dca746eec9e5bbbec1c445dc85 |
| ENCFF525SCQ.tabix.bed.gz.tbi.dvc | 109.0 B | fb70948a9d75ff2279cd6d3373b6ac14 |
| genomic_resource.yaml | 4.75 KB | 5f33af3dfe3a59ab130402667157b11a |
| genomic_resource_original.yaml | 4.59 KB | cee9c8656c219b65850a7f950ab51732 |
| statistics/ |