TF_ChIP-seq_ENCSR654PQY
TF_ChIP-seq ENCSR654PQY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616" and target="ZNF616"]
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| Id: | TF_ChIP-seq/ENCSR654PQY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR654PQY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616" and target="ZNF616"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN746CZX|/analyses/ENCAN746CZX/} has in progress subobject document {9ecc91d3-2734-4c35-a281-823a16c9bf43|/documents/9ecc91d3-2734-4c35-a281-823a16c9bf43/} audit_internal_action: Released analysis {ENCAN746CZX|/analyses/ENCAN746CZX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF863CFH|/files/ENCFF863CFH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 16968335 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF616-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF454KRO|/files/ENCFF454KRO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF454KRO|/files/ENCFF454KRO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF863CFH|/files/ENCFF863CFH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF863CFH|/files/ENCFF863CFH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR654PQY | float |
TF_ChIP-seq_ENCSR654PQY |
TF_ChIP-seq ENCSR654PQY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616" and target="ZNF616"]
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[7.12, 829] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF255QEY.bed.gz | 159.01 KB | 38dac0a1d09502b22c0488ed8716ed7c |
| ENCFF255QEY.bed.gz.dvc | 100.0 B | 1de96440f13dfbf05cf9347e091dadeb |
| ENCFF255QEY.tabix.bed.gz | 123.81 KB | e40b50b9a0fab3d719c36c4d53d6e524 |
| ENCFF255QEY.tabix.bed.gz.dvc | 106.0 B | a09ab234b5d62b6e33db3c8546debe46 |
| ENCFF255QEY.tabix.bed.gz.tbi | 63.1 KB | 93ecbb1d766e5918ec98056c3b7bf88c |
| ENCFF255QEY.tabix.bed.gz.tbi.dvc | 109.0 B | 715210e569a8e9d1de5571b25777df3b |
| genomic_resource.yaml | 4.94 KB | 9954537ebf4b3c71e6ddda22c1e51f29 |
| genomic_resource_original.yaml | 4.77 KB | 740b15830baf7573814f8b2d66e3355b |
| statistics/ |