TF_ChIP-seq_ENCSR654CQU
TF_ChIP-seq ENCSR654CQU [biosample_summary="Homo sapiens K562" and target="SNIP1"]
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| Id: | TF_ChIP-seq/ENCSR654CQU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR654CQU [biosamplesummary="Homo sapiens K562" and target="SNIP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN506ZJF|/analyses/ENCAN506ZJF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF661VFO|/files/ENCFF661VFO/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline has 19319407 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SNIP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF661VFO|/files/ENCFF661VFO/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF661VFO|/files/ENCFF661VFO/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.42. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF002SXA|/files/ENCFF002SXA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF002SXA|/files/ENCFF002SXA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR654CQU | float |
TF_ChIP-seq_ENCSR654CQU |
TF_ChIP-seq ENCSR654CQU [biosample_summary="Homo sapiens K562" and target="SNIP1"]
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[9.7, 6.78e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF020XNM.bed.gz | 41.77 KB | 48c1de3dfe2b75a9cf554fade58cce38 |
| ENCFF020XNM.bed.gz.dvc | 99.0 B | fa833e97094d320f95f302b44f8e1aca |
| ENCFF020XNM.tabix.bed.gz | 26.81 KB | 0c706bb298846cb7a2796d262c762ef2 |
| ENCFF020XNM.tabix.bed.gz.dvc | 105.0 B | eb201a1dca18d41d8b1391223116795b |
| ENCFF020XNM.tabix.bed.gz.tbi | 24.92 KB | 46be0956b29ab51b1651a5f7f5a04e74 |
| ENCFF020XNM.tabix.bed.gz.tbi.dvc | 109.0 B | ac7282c1032a495b1924fa5c9f86e453 |
| genomic_resource.yaml | 4.47 KB | ce3ba6b106eb45da9d9822c0d318d3b2 |
| genomic_resource_original.yaml | 4.37 KB | 7ce005eb9b3ab3a5e8f541ef7ec61b6b |
| statistics/ |