TF_ChIP-seq_ENCSR652OGX
TF_ChIP-seq ENCSR652OGX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511" and target="ZNF511"]
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| Id: | TF_ChIP-seq/ENCSR652OGX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR652OGX [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511" and target="ZNF511"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN913WNH|/analyses/ENCAN913WNH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF991BKJ|/files/ENCFF991BKJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF991BKJ|/files/ENCFF991BKJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF612NTY|/files/ENCFF612NTY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF612NTY|/files/ENCFF612NTY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR652OGX | float |
TF_ChIP-seq_ENCSR652OGX |
TF_ChIP-seq ENCSR652OGX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511" and target="ZNF511"]
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[11.6, 596] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF653ABW.bed.gz | 211.47 KB | aafdea2a30b838b4fe35796e02c3c610 |
| ENCFF653ABW.bed.gz.dvc | 100.0 B | aa7503c43cc394dc39c7d4349d0418f8 |
| ENCFF653ABW.tabix.bed.gz | 156.51 KB | ea0723377f9e46e727d12f59a67ea9e5 |
| ENCFF653ABW.tabix.bed.gz.dvc | 106.0 B | 4e856309ebd906583d5b8d15cceddf22 |
| ENCFF653ABW.tabix.bed.gz.tbi | 76.24 KB | b21d4ecee6c975288403fa60bf44afe7 |
| ENCFF653ABW.tabix.bed.gz.tbi.dvc | 109.0 B | 7a1a239804258fda7fb1a6d0380a1e6f |
| genomic_resource.yaml | 4.24 KB | 6f3738886808378ce34c8fde8e2af9f7 |
| genomic_resource_original.yaml | 4.07 KB | 0368ec1f23071df14354b052f4c36476 |
| statistics/ |