TF_ChIP-seq_ENCSR645ZWR
TF_ChIP-seq ENCSR645ZWR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]
×
| Id: | TF_ChIP-seq/ENCSR645ZWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR645ZWR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN724SLU|/analyses/ENCAN724SLU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF390YNK|/files/ENCFF390YNK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF390YNK|/files/ENCFF390YNK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF122YGT|/files/ENCFF122YGT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF122YGT|/files/ENCFF122YGT/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.86. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR645ZWR | float |
TF_ChIP-seq_ENCSR645ZWR |
TF_ChIP-seq ENCSR645ZWR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]
|
|
[13, 576] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF430YXJ.bed.gz | 41.23 KB | 6b1da25b7cdbe3f2993a8fa36995e18d |
| ENCFF430YXJ.bed.gz.dvc | 99.0 B | c7e71c10788e7d356a36d35146a1deaf |
| ENCFF430YXJ.tabix.bed.gz | 27.41 KB | e8984f232376f164613a5872f40e2709 |
| ENCFF430YXJ.tabix.bed.gz.dvc | 105.0 B | 4b9857d1800e1f60469c3ee228234af8 |
| ENCFF430YXJ.tabix.bed.gz.tbi | 20.35 KB | 8c0a6afbcab1ed48d2c9031da5dd4116 |
| ENCFF430YXJ.tabix.bed.gz.tbi.dvc | 109.0 B | e5c5490f77898e6199cbf2d83c2acc73 |
| genomic_resource.yaml | 4.22 KB | 754910816cacfa796e9c08d81eb07316 |
| genomic_resource_original.yaml | 4.06 KB | a07ce194ebcbf00f92518a2ee265434c |
| statistics/ |